Tc00.1047053511667.20 cDNA ORF clone, Trypanosoma cruzi strain CL Brener

Gene
Clones
gRNAs

Summary

Gene Symbol	Tc00.1047053511667.20
Entrez Gene ID	3547789
Full Name	retrotransposon hot spot (RHS) protein
Gene Type	protein-coding
Organism	Trypanosoma cruzi strain CL Brener

mRNA and Protein(s)

mRNA	Protein	Name
XM_810880.1	XP_815973.1	retrotransposon hot spot (RHS) protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B
Science (New York, N.Y.)309(5733)409-15(2005 Jul)

Comparative genomics of trypanosomatid parasitic protozoa.
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N
Science (New York, N.Y.)309(5733)404-9(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Tc00.1047053511667.20 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Tc00.1047053511667.20 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OTb10511	XM_810880.1 Latest version!	Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein partial mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$307.30 $439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Tc00.1047053511667.20 ( XM_810880.1 ) cDNA ORF clone, Trypanosoma cruzi strain CL Brener -> XP_815973.1 Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein partial mRNA.

Price & Availability↑

CloneID	OTb10511
Clone ID Related Accession (Same CDS sequence)	XM_810880.1
Accession Version	XM_810880.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1764bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1225382400000
Organism	Trypanosoma cruzi strain CL Brener
Product	retrotransposon hot spot (RHS) protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_001849450). COMPLETENESS: incomplete on both ends.

ATGCTGGAGG GATTGTACGA GTCTGTGTAC AATGCGAGGT GGCATCATGT CGTGGAAGTT 
CCTGGTGGCC AGGGGACGGG AATGGAGGTG AAGGAGGGGA AACCGAAACA GTCATGGACG 
TACAAGAAAG CTGGCAACAC CTTCGAAAAG GATGACGCTG TGCAGCAATC CGGTGAAGCA 
CCTCCCAGAC TGATGGTGCT CACCTCGGAC AGGGGATGGC CGTACACGAT GAATGGGCCG 
CATGGGTGTG GCAATGACTT GTGTGTTAAC TGCGAGGTGG ATCGAGTGTG GCAGATCGTC 
GAGCGCGATC TCACCGCGTG GTTCAGCAAT TTTGATTTGA CTCTCAATCC TTCACCTTTG 
CCGCATGTGC TGATTGGGAC GCCCGGGATT GGGAAGTCGA TGGCTGCCGG CTCGTACCTC 
CTCTACCAGC TGCTGCAGTA CGATGCGGAG AAACTCCAAG TGGTTGTCCA CTGTTTTGGA 
ATCACGATGT ACGTGTTTGA CAAGACCACC AAAACCGTGA AAAAATACAA GGGTGAGATA 
ACATCCAAGA ATGTTTTGGA TGGTTTGTGG CAGCGTGGGG TGAAAGGGTA TATTATTTAC 
GATGTGGCAA GGAAGGGAAC GCCGCCCGAC ACAGGTTTTG CGCCCTCCAC CGGATGGGGC 
ATGATTGTGG TGTCATCGCC AAACCTGGAC AACTATGATG AGTGGGAGAC GCAAGTACAA 
GCCAGTCGAA TCATCATGAA TTGCCCCGAC GAGATGGATG TGAAGGCGAT GTGTACATGG 
ATGAAGCGAG GTCTGGATCC AGATAAGCAA GCGGGATACT GGAGGATGGT CAAAGAACGC 
ATGGATAAAG TGGGGCCGAT TCTACGTTAC ATCTTTGATG AGGAAATTTA TATTGATCGC 
TTGGGTGCCG TTAATGGTGC CTTGTTAGCG ATCAAACCTA GTGATGTTGG AGAGCACTTT 
ACCCTGAGAG GAAGCAAGCT ATGGTATTCC GAGGATCCGT CTCAAAAACT TGTGAAGGTC 
GTCCGGGAAA GAACAGATGA GGGTGTTGAG GTATTTCTCA ACGCATCAAT AAGTGCTGAT 
ATCGGGTTTC GAATTGCGGA CCGTTTGGAA AAGGAAATGG ATGCGAAGGA TCTTTTGTTG 
CTAATATTGG GATCGCGTGG TGCTCTTGCT TCCCGAGCTC TGGAACAATT AGGTTTGCGT 
GCCTTCATGT ATGGGGAGCT TGTCTGTGCA TTAGTAGAGG AACTCAAGGA GCTGAGGCCA 
CCAGAACGTA ATGAAGCACG GGATTCAGTG CTGAAGGTAA ACCATCAAGG GCACCCCACT 
CGCACCGTTG GATTAGCGGG ACTGGAAGGC GGTGTCACGA GGATTCCGAT GGAGTACGGG 
GTGCTGTACC TACCGAAGGT TGAAAACTTT CCGCTGGTGG ACGGCTTTTT CTTTGTTGAT 
TCGCCGTGGA GGACGCTGGT TGGGCTGCAG ATGACTACGG CGAGCGCGCA CCACACGACA 
ACCAGCACCG TGAAGCAGTT CACTGAGTGC CTGGCGGCAT ATTTTGAAGG ATGGGACGAA 
TTATCCCGAG ACATGTCGTG GGAGATGATT TATATAAAAA ACGCATTCAG CAAAAAGATA 
TCAAAATGGC AGAGATGCGA TGTCGTCAAT CCCAATAATG AAACCGACGC TGAAAAAAAA 
ATTGTGGCGT TCTGGAATAA AGAGGTACAC CAATACCAGT TTATGTTAAC ACGTGATTTT 
TTAAGTAAAA TCACAGAAAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_815973.1
CDS	1..1764
Translation	MLEGLYESVYNARWHHVVEVPGGQGTGMEVKEGKPKQSWTYKKAGNTFEKDDAVQQSGEAPPRLMVLTSDRGWPYTMNGPHGCGNDLCVNCEVDRVWQIVERDLTAWFSNFDLTLNPSPLPHVLIGTPGIGKSMAAGSYLLYQLLQYDAEKLQVVVHCFGITMYVFDKTTKTVKKYKGEITSKNVLDGLWQRGVKGYIIYDVARKGTPPDTGFAPSTGWGMIVVSSPNLDNYDEWETQVQASRIIMNCPDEMDVKAMCTWMKRGLDPDKQAGYWRMVKERMDKVGPILRYIFDEEIYIDRLGAVNGALLAIKPSDVGEHFTLRGSKLWYSEDPSQKLVKVVRERTDEGVEVFLNASISADIGFRIADRLEKEMDAKDLLLLILGSRGALASRALEQLGLRAFMYGELVCALVEELKELRPPERNEARDSVLKVNHQGHPTRTVGLAGLEGGVTRIPMEYGVLYLPKVENFPLVDGFFFVDSPWRTLVGLQMTTASAHHTTTSTVKQFTECLAAYFEGWDELSRDMSWEMIYIKNAFSKKISKWQRCDVVNPNNETDAEKKIVAFWNKEVHQYQFMLTRDFLSKITEM

Target ORF information:

RefSeq Version	XM_810880.1
Organism	Trypanosoma cruzi strain CL Brener
Definition	Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein partial mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_810880.1

ORF Insert Sequence:

ATGCTGGAGG GATTGTACGA GTCTGTGTAC AATGCGAGGT GGCATCATGT CGTGGAAGTT 
CCTGGTGGCC AGGGGACGGG AATGGAGGTG AAGGAGGGGA AACCGAAACA GTCATGGACG 
TACAAGAAAG CTGGCAACAC CTTCGAAAAG GATGACGCTG TGCAGCAATC CGGTGAAGCA 
CCTCCCAGAC TGATGGTGCT CACCTCGGAC AGGGGATGGC CGTACACGAT GAATGGGCCG 
CATGGGTGTG GCAATGACTT GTGTGTTAAC TGCGAGGTGG ATCGAGTGTG GCAGATCGTC 
GAGCGCGATC TCACCGCGTG GTTCAGCAAT TTTGATTTGA CTCTCAATCC TTCACCTTTG 
CCGCATGTGC TGATTGGGAC GCCCGGGATT GGGAAGTCGA TGGCTGCCGG CTCGTACCTC 
CTCTACCAGC TGCTGCAGTA CGATGCGGAG AAACTCCAAG TGGTTGTCCA CTGTTTTGGA 
ATCACGATGT ACGTGTTTGA CAAGACCACC AAAACCGTGA AAAAATACAA GGGTGAGATA 
ACATCCAAGA ATGTTTTGGA TGGTTTGTGG CAGCGTGGGG TGAAAGGGTA TATTATTTAC 
GATGTGGCAA GGAAGGGAAC GCCGCCCGAC ACAGGTTTTG CGCCCTCCAC CGGATGGGGC 
ATGATTGTGG TGTCATCGCC AAACCTGGAC AACTATGATG AGTGGGAGAC GCAAGTACAA 
GCCAGTCGAA TCATCATGAA TTGCCCCGAC GAGATGGATG TGAAGGCGAT GTGTACATGG 
ATGAAGCGAG GTCTGGATCC AGATAAGCAA GCGGGATACT GGAGGATGGT CAAAGAACGC 
ATGGATAAAG TGGGGCCGAT TCTACGTTAC ATCTTTGATG AGGAAATTTA TATTGATCGC 
TTGGGTGCCG TTAATGGTGC CTTGTTAGCG ATCAAACCTA GTGATGTTGG AGAGCACTTT 
ACCCTGAGAG GAAGCAAGCT ATGGTATTCC GAGGATCCGT CTCAAAAACT TGTGAAGGTC 
GTCCGGGAAA GAACAGATGA GGGTGTTGAG GTATTTCTCA ACGCATCAAT AAGTGCTGAT 
ATCGGGTTTC GAATTGCGGA CCGTTTGGAA AAGGAAATGG ATGCGAAGGA TCTTTTGTTG 
CTAATATTGG GATCGCGTGG TGCTCTTGCT TCCCGAGCTC TGGAACAATT AGGTTTGCGT 
GCCTTCATGT ATGGGGAGCT TGTCTGTGCA TTAGTAGAGG AACTCAAGGA GCTGAGGCCA 
CCAGAACGTA ATGAAGCACG GGATTCAGTG CTGAAGGTAA ACCATCAAGG GCACCCCACT 
CGCACCGTTG GATTAGCGGG ACTGGAAGGC GGTGTCACGA GGATTCCGAT GGAGTACGGG 
GTGCTGTACC TACCGAAGGT TGAAAACTTT CCGCTGGTGG ACGGCTTTTT CTTTGTTGAT 
TCGCCGTGGA GGACGCTGGT TGGGCTGCAG ATGACTACGG CGAGCGCGCA CCACACGACA 
ACCAGCACCG TGAAGCAGTT CACTGAGTGC CTGGCGGCAT ATTTTGAAGG ATGGGACGAA 
TTATCCCGAG ACATGTCGTG GGAGATGATT TATATAAAAA ACGCATTCAG CAAAAAGATA 
TCAAAATGGC AGAGATGCGA TGTCGTCAAT CCCAATAATG AAACCGACGC TGAAAAAAAA 
ATTGTGGCGT TCTGGAATAA AGAGGTACAC CAATACCAGT TTATGTTAAC ACGTGATTTT 
TTAAGTAAAA TCACAGAAAT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.
Science (New York, N.Y.)309(5733)409-15(2005 Jul)
El-Sayed NM,Myler PJ,Bartholomeu DC,Nilsson D,Aggarwal G,Tran AN,Ghedin E,Worthey EA,Delcher AL,Blandin G,Westenberger SJ,Caler E,Cerqueira GC,Branche C,Haas B,Anupama A,Arner E,Aslund L,Attipoe P,Bontempi E,Bringaud F,Burton P,Cadag E,Campbell DA,Carrington M,Crabtree J,Darban H,da Silveira JF,de Jong P,Edwards K,Englund PT,Fazelina G,Feldblyum T,Ferella M,Frasch AC,Gull K,Horn D,Hou L,Huang Y,Kindlund E,Klingbeil M,Kluge S,Koo H,Lacerda D,Levin MJ,Lorenzi H,Louie T,Machado CR,McCulloch R,McKenna A,Mizuno Y,Mottram JC,Nelson S,Ochaya S,Osoegawa K,Pai G,Parsons M,Pentony M,Pettersson U,Pop M,Ramirez JL,Rinta J,Robertson L,Salzberg SL,Sanchez DO,Seyler A,Sharma R,Shetty J,Simpson AJ,Sisk E,Tammi MT,Tarleton R,Teixeira S,Van Aken S,Vogt C,Ward PN,Wickstead B,Wortman J,White O,Fraser CM,Stuart KD,Andersson B

Comparative genomics of trypanosomatid parasitic protozoa.
Science (New York, N.Y.)309(5733)404-9(2005 Jul)
El-Sayed NM,Myler PJ,Blandin G,Berriman M,Crabtree J,Aggarwal G,Caler E,Renauld H,Worthey EA,Hertz-Fowler C,Ghedin E,Peacock C,Bartholomeu DC,Haas BJ,Tran AN,Wortman JR,Alsmark UC,Angiuoli S,Anupama A,Badger J,Bringaud F,Cadag E,Carlton JM,Cerqueira GC,Creasy T,Delcher AL,Djikeng A,Embley TM,Hauser C,Ivens AC,Kummerfeld SK,Pereira-Leal JB,Nilsson D,Peterson J,Salzberg SL,Shallom J,Silva JC,Sundaram J,Westenberger S,White O,Melville SE,Donelson JE,Andersson B,Stuart KD,Hall N

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Tc00.1047053511667.20 cDNA ORF clone, Trypanosoma cruzi strain CL Brener

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

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