Gene Symbol | SIM1 |
Entrez Gene ID | 100154026 |
Full Name | single-minded family bHLH transcription factor 1 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
Learn More
Learn More
Learn More
Learn More
ORF » Species Summary » Sus scrofa » SIM1 cDNA ORF clone
Gene Symbol | SIM1 |
Entrez Gene ID | 100154026 |
Full Name | single-minded family bHLH transcription factor 1 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_021090015.1 | XP_020945674.1 | single-minded homolog 1 isoform X2 |
XM_021089973.1 | XP_020945632.1 | single-minded homolog 1 isoform X1 |
XM_005659332.2 | XP_005659389.1 | single-minded homolog 1 isoform X1 |
NM_001172585.2 | NP_001166056.2 | single-minded homolog 1 |
XM_021089944.1 | XP_020945603.1 | single-minded homolog 1 isoform X1 |
[Effect of SNP in the exon 8 of SIM1 gene on backfat thickness in pigs].
Guo XL, Chen Z, Zhao XF, Xu NY
Yi chuan = Hereditas30(6)755-9(2008 Jun)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SIM1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SIM1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe29646 | |
Clone ID Related Accession (Same CDS sequence) | NM_001172585.2 | |
Accession Version | NM_001172585.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2301bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1524326400000 | |
Organism | Sus scrofa(pig) | |
Product | single-minded homolog 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GU451304.2. On Jun 9, 2010 this sequence version replaced NM_001172585.1. ##Evidence-Data-START## Transcript exon combination :: GU451304.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02389758 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001166056.2 |
CDS | 178..2478 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe01858 | |
Clone ID Related Accession (Same CDS sequence) | XM_005659332.2 | |
Accession Version | XM_005659332.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2304bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1441814400000 | |
Organism | Sus scrofa(Pig) | |
Product | single-minded homolog 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003609090.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005659332.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005659389.1 |
CDS | 15..2318 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe229082 | |
Clone ID Related Accession (Same CDS sequence) | XM_021089973.1 , XM_021089944.1 | |
Accession Version | XM_021089973.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2301bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | single-minded homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010443.5) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020945632.1 |
CDS | 648..2948 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe229082 | |
Clone ID Related Accession (Same CDS sequence) | XM_021089973.1 , XM_021089944.1 | |
Accession Version | XM_021089944.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2301bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | single-minded homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010443.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020945603.1 |
CDS | 787..3087 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAAGAGA AGTCCAAAAA TGCTGCCCGG ACTAGGAGGG AGAAGGAAAA CAGTGAATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe229083 | |
Clone ID Related Accession (Same CDS sequence) | XM_021090015.1 | |
Accession Version | XM_021090015.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1998bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | single-minded homolog 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010443.5) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTACATTT CGGAGACAGC CTCAGTCCAC CTGGGTCTTT CTCAGGTAGA GCTGACCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020945674.1 |
CDS | 227..2224 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTACATTT CGGAGACAGC CTCAGTCCAC CTGGGTCTTT CTCAGGTAGA GCTGACCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
[Effect of SNP in the exon 8 of SIM1 gene on backfat thickness in pigs]. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |