Gene Symbol | Mmp-1 |
Entrez Gene ID | 657261 |
Full Name | matrix metalloproteinase 1 |
Synonyms | Mmp1 |
Gene Type | protein-coding |
Organism | Tribolium castaneum(red flour beetle) |
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ORF » Species Summary » Tribolium castaneum » Mmp-1 cDNA ORF clone
Gene Symbol | Mmp-1 |
Entrez Gene ID | 657261 |
Full Name | matrix metalloproteinase 1 |
Synonyms | Mmp1 |
Gene Type | protein-coding |
Organism | Tribolium castaneum(red flour beetle) |
mRNA | Protein | Name |
---|---|---|
NM_001164174.1 | NP_001157646.1 | matrix metalloproteinase 1 isoform 1 precursor |
XM_008195377.2 | XP_008193599.1 | matrix metalloproteinase 1 isoform X4 |
NM_001164175.1 | NP_001157647.1 | matrix metalloproteinase 1 isoform 2 precursor |
XM_015980126.1 | XP_015835612.1 | matrix metalloproteinase 1 isoform X3 |
XM_008195375.2 | XP_008193597.1 | matrix metalloproteinase 1 isoform X1 |
XM_008195376.2 | XP_008193598.1 | matrix metalloproteinase 1 isoform X2 |
MMPs regulate both development and immunity in the tribolium model insect.
Knorr E, Schmidtberg H, Vilcinskas A, Altincicek B
PloS one4(3)e4751(2009)
Analysis of transcriptome data in the red flour beetle, Tribolium castaneum.
Park Y, Aikins J, Wang LJ, Beeman RW, Oppert B, Lord JC, Brown SJ, Lorenzen MD, Richards S, Weinstock GM, Gibbs RA
Insect biochemistry and molecular biology38(4)380-6(2008 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Mmp-1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Mmp-1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OTg15891 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164174.1 | |
Accession Version | NM_001164174.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1746bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1535644800000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DT792601.1, ES553699.1, DT777405.1, DT779755.1, ES553615.1, DN650240.1 and DT771118.1. On Aug 16, 2009 this sequence version replaced XM_963729.2. Transcript Variant: This variant (1) lacks an alternate exon in the 3' coding region, compared to variant 2. The resulting isoform (1) has a longer and distinct C-terminus, compared to isoform 2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA1523770, SAMEA1523771 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157646.1 |
CDS | 210..1955 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg15894 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164175.1 | |
Accession Version | NM_001164175.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1653bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1535644800000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform 2 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DT792601.1, ES553699.1, DT777405.1, DT779755.1, ES553615.1 and DT771118.1. Transcript Variant: This variant (2) represents the longer transcript but encodes the shorter isoform (2). ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA1523770, SAMEA1523771 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157647.1 |
CDS | 210..1862 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg06634 | |
Clone ID Related Accession (Same CDS sequence) | XM_008195375.2 | |
Accession Version | XM_008195375.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1674bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450166.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008195375.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008193597.1 |
CDS | 231..1904 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg06635 | |
Clone ID Related Accession (Same CDS sequence) | XM_008195376.2 | |
Accession Version | XM_008195376.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1617bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450166.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008195376.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008193598.1 |
CDS | 231..1847 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg06636 | |
Clone ID Related Accession (Same CDS sequence) | XM_008195377.2 | |
Accession Version | XM_008195377.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1545bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450166.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008195377.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008193599.1 |
CDS | 231..1775 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg19173 | |
Clone ID Related Accession (Same CDS sequence) | XM_015980126.1 | |
Accession Version | XM_015980126.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1581bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | matrix metalloproteinase 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450166.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015835612.1 |
CDS | 231..1811 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGCACA CAGTGATCAG TTTTACCCTC TTTGCCACAC TTCTCCAGCT TTCGAAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
MMPs regulate both development and immunity in the tribolium model insect. |
Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. |