Gene Symbol | HMBS |
Entrez Gene ID | 396581 |
Full Name | hydroxymethylbilane synthase |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
Learn More
Learn More
Learn More
Learn More
ORF » Species Summary » Sus scrofa » HMBS cDNA ORF clone
Gene Symbol | HMBS |
Entrez Gene ID | 396581 |
Full Name | hydroxymethylbilane synthase |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_021102148.1 | XP_020957807.1 | porphobilinogen deaminase isoform X2 |
NM_001097412.1 | NP_001090881.1 | porphobilinogen deaminase |
XM_021102144.1 | XP_020957803.1 | porphobilinogen deaminase isoform X1 |
XM_021102146.1 | XP_020957805.1 | porphobilinogen deaminase isoform X2 |
XM_021102147.1 | XP_020957806.1 | porphobilinogen deaminase isoform X2 |
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR.
Nygard AB, Jørgensen CB, Cirera S, Fredholm M
BMC molecular biology867(2007 Aug)
Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGC1A.
Erkens T, Van Poucke M, Vandesompele J, Goossens K, Van Zeveren A, Peelman LJ
BMC biotechnology641(2006 Oct)
The use of endogenous and exogenous reference RNAs for qualitative and quantitative detection of PRRSV in porcine semen.
Revilla-Fernández S, Wallner B, Truschner K, Benczak A, Brem G, Schmoll F, Mueller M, Steinborn R
Journal of virological methods126(1-2)21-30(2005 Jun)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following HMBS gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HMBS cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe28783 | |
Clone ID Related Accession (Same CDS sequence) | NM_001097412.1 | |
Accession Version | NM_001097412.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1086bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1445011200000 | |
Organism | Sus scrofa(pig) | |
Product | porphobilinogen deaminase | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ845174.1. ##Evidence-Data-START## Transcript exon combination :: DQ845174.1, AK238444.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876835 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCTGGTA ACGGCAACGC AGCCGCAACG GCGGAAGAAA ATAGCCCAAA GATGAGAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001090881.1 |
CDS | 108..1193 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTGGTA ACGGCAACGC AGCCGCAACG GCGGAAGAAA ATAGCCCAAA GATGAGAGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225118 | |
Clone ID Related Accession (Same CDS sequence) | XM_021102144.1 | |
Accession Version | XM_021102144.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1068bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | porphobilinogen deaminase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGATTCC ATCAGGAAGA AAACAGCCCA AAGATGAGAG TGATTCGTGT GGGTACCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020957803.1 |
CDS | 308..1375 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGATTCC ATCAGGAAGA AAACAGCCCA AAGATGAGAG TGATTCGTGT GGGTACCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225119 | |
Clone ID Related Accession (Same CDS sequence) | XM_021102148.1 , XM_021102146.1 , XM_021102147.1 | |
Accession Version | XM_021102148.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | porphobilinogen deaminase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020957807.1 |
CDS | 290..1324 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225119 | |
Clone ID Related Accession (Same CDS sequence) | XM_021102148.1 , XM_021102146.1 , XM_021102147.1 | |
Accession Version | XM_021102146.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | porphobilinogen deaminase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020957805.1 |
CDS | 472..1506 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225119 | |
Clone ID Related Accession (Same CDS sequence) | XM_021102148.1 , XM_021102146.1 , XM_021102147.1 | |
Accession Version | XM_021102147.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | porphobilinogen deaminase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020957806.1 |
CDS | 345..1379 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGAGTGA TTCGTGTGGG TACCCGCAAA AGCCAGCTGG CCCGCATACA AACGGACAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. |
Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGC1A. |
The use of endogenous and exogenous reference RNAs for qualitative and quantitative detection of PRRSV in porcine semen. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |