Gene Symbol | LOC7469839 |
Entrez Gene ID | 7469839 |
Full Name | hypothetical protein |
Synonyms | POPTRDRAFT_738338 |
Gene Type | protein-coding |
Organism | Populus trichocarpa(black cottonwood) |
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ORF » Species Summary » Populus trichocarpa » LOC7469839 cDNA ORF clone
Gene Symbol | LOC7469839 |
Entrez Gene ID | 7469839 |
Full Name | hypothetical protein |
Synonyms | POPTRDRAFT_738338 |
Gene Type | protein-coding |
Organism | Populus trichocarpa(black cottonwood) |
mRNA | Protein | Name |
---|---|---|
XM_024591007.1 | XP_024446775.1 | gluconokinase isoform X3 |
XM_006371181.2 | XP_006371243.1 | gluconokinase isoform X1 |
XM_002325342.3 | XP_002325378.2 | gluconokinase isoform X2 |
XM_024591002.1 | XP_024446770.1 | gluconokinase isoform X2 |
XM_024591003.1 | XP_024446771.1 | gluconokinase isoform X2 |
XM_024591006.1 | XP_024446774.1 | gluconokinase isoform X3 |
XM_006371181.1 | XP_006371243.1 | hypothetical protein |
XM_002325342.2 | XP_002325378.2 | shikimate kinase family protein |
XM_024591004.1 | XP_024446772.1 | gluconokinase isoform X2 |
XM_024591005.1 | XP_024446773.1 | gluconokinase isoform X2 |
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC7469839 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7469839 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_002325342.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002325342.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_002325378.2 |
CDS | 387..956 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_024591002.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446770.1 |
CDS | 490..1059 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_024591003.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446771.1 |
CDS | 415..984 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_002325342.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1388332800000 | |
Organism | Populus trichocarpa(Populus balsamifera subsp. trichocarpa) | |
Product | shikimate kinase family protein | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008485). On Dec 16, 2013 this sequence version replaced XM_002325342.1. |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_002325378.2 |
CDS | 218..787 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_024591004.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446772.1 |
CDS | 369..938 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36906 | |
Clone ID Related Accession (Same CDS sequence) | XM_002325342.3 , XM_024591002.1 , XM_024591003.1 , XM_002325342.2 , XM_024591004.1 , XM_024591005.1 | |
Accession Version | XM_024591005.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446773.1 |
CDS | 323..892 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTTCTG ATCTCCAAGG TAAAGCGATT GTAATCATGG GTGTCAGTGG CGCTGGGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36907 | |
Clone ID Related Accession (Same CDS sequence) | XM_006371181.2 , XM_006371181.1 | |
Accession Version | XM_006371181.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 585bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006371181.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCACTTT TCACAGAAAT CAATTTGCTG TCAGGTAAAG CGATTGTAAT CATGGGTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006371243.1 |
CDS | 350..934 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCACTTT TCACAGAAAT CAATTTGCTG TCAGGTAAAG CGATTGTAAT CATGGGTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa36907 | |
Clone ID Related Accession (Same CDS sequence) | XM_006371181.2 , XM_006371181.1 | |
Accession Version | XM_006371181.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 585bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1388332800000 | |
Organism | Populus trichocarpa(Populus balsamifera subsp. trichocarpa) | |
Product | hypothetical protein | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008485). |
1 | ATGCCACTTT TCACAGAAAT CAATTTGCTG TCAGGTAAAG CGATTGTAAT CATGGGTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006371243.1 |
CDS | 57..641 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCACTTT TCACAGAAAT CAATTTGCTG TCAGGTAAAG CGATTGTAAT CATGGGTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa448400 | |
Clone ID Related Accession (Same CDS sequence) | XM_024591007.1 , XM_024591006.1 | |
Accession Version | XM_024591007.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 534bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGTCA GTGGCGCTGG GAAATCTACA ATAGGTGAGC TTCTGGCCAA AGCTTTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446775.1 |
CDS | 297..830 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGTGTCA GTGGCGCTGG GAAATCTACA ATAGGTGAGC TTCTGGCCAA AGCTTTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OPa448400 | |
Clone ID Related Accession (Same CDS sequence) | XM_024591007.1 , XM_024591006.1 | |
Accession Version | XM_024591006.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 534bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1523116800000 | |
Organism | Populus trichocarpa(black cottonwood) | |
Product | gluconokinase isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGTCA GTGGCGCTGG GAAATCTACA ATAGGTGAGC TTCTGGCCAA AGCTTTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024446774.1 |
CDS | 278..811 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGTGTCA GTGGCGCTGG GAAATCTACA ATAGGTGAGC TTCTGGCCAA AGCTTTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). |