Revolutionizing Genome Editing: Integrating Large Genes with Precision

sean.huang
Author: Jia Bao
Editor: Sean Huang

Introduction

Genome editing technologies have undergone a paradigm shift with the introduction of innovative methods that enhance precision and efficiency in manipulating DNA. At the forefront of these advancements is the CRISPR/Cas system, a groundbreaking tool derived from the bacterial immune system, which enables scientists to make precise, targeted changes to the DNA of living organisms. CRISPR/Cas9, in particular, has revolutionized molecular biology by allowing for the cutting and modification of specific DNA sequences with unprecedented accuracy. In addition to CRISPR/Cas9, the advent of prime editing, developed by David Liu and his team, offers even greater precision by directly writing new genetic information into a target DNA sequence without creating double-strand breaks. Visionary leaders like Jennifer Doudna, Feng Zhang, and David Liu have been pivotal in advancing these technologies, revolutionizing molecular biology.

Recently, researchers at prestigious institutions such as Harvard University and MIT have published groundbreaking findings in the study titled "Efficient site-specific integration of large genes in mammalian cells via continuously evolved recombinases and prime editing." This research integrates continuously evolved recombinases with prime editing to achieve unprecedented control over gene integration in mammalian genomes.

Figure 1. Scheme of Crispr/Cas gene-editing system.
Trends in Biotechnology 2023 411000-1012 DOI: (10.1016/j.tibtech.2023.03.004)

Study Overview and Key Findings

The study introduces evolved variants of the Bxb1 recombinase, namely evoBxb1 and eeBxb1, engineered through phage-assisted continuous evolution. These recombinases significantly enhance the efficiency of integrating large genes, surpassing wild-type Bxb1 by up to 3.2-fold in human cell lines equipped with recombinase landing sites. Notably, single-transfection experiments demonstrate that PASSIGE with eeBxb1 achieves an average efficiency of 23% for targeted gene integration, exceeding 30% in primary human fibroblasts across multiple genomic loci. Comparative analyses with PASTE highlight the superior performance of PASSIGE, underscoring its potential as an exceptionally efficient method for precise gene editing in mammalian cells.

Figure 2. An overview of PASSIGE. Prime editing (dual flap or single flap) precisely installs a large serine recombinase (LSR) attachment site (attB or attP) into a target locus in the genome. The LSR then recognizes the installed att motif and integrates donor DNA into this site.
Nat. Biomed. Eng (2024). doi.org/10.1038/s41551-024-01227-1

Implications for Biomedical Applications

The implications of these advancements span across biomedical and biotechnological domains:

  • Advancements in Gene Therapy: Enhanced capabilities in integrating large genes pave the way for more effective gene therapies. For instance, the recent FDA approval of a gene therapy for sickle cell anemia in 2023 highlights how genome editing can replace defective genes with functional ones, offering hope for patients with genetic disorders.
  • Innovations in Cellular Engineering: Applications extend to engineering stem cells for regenerative medicine, where precise genomic modifications are crucial for developing personalized treatments tailored to individual patients.
  • Biotechnological Innovations: In agriculture, integrating complex genetic constructs enhances crop resilience and productivity, contributing to global food security by addressing challenges posed by climate change and population growth.

Figure 3. Application of gene editing.

Future Directions and Challenges

Looking ahead, optimizing delivery systems to enhance specificity and reduce off-target effects remains critical for translating these advancements into clinical applications. For instance, developing novel delivery vectors based on nanoparticles or viral vectors tailored for specific cell types can enhance the efficiency and safety of gene editing therapies. Additionally, refining genome editing techniques to achieve higher editing efficiencies and lower rates of off-target mutations is essential. Techniques such as base editing and prime editing continue to evolve, offering more precise control over genomic modifications.

Moreover, navigating regulatory landscapes globally presents challenges in ensuring the ethical and safe application of genome editing technologies. Developing standardized protocols and guidelines for clinical trials and therapeutic applications is crucial to gaining regulatory approval and public acceptance.

Conclusion and Future Prospects

In conclusion, the integration of continuously evolved recombinases with prime editing signifies a monumental leap in genome editing capabilities. This synergistic approach not only enhances the precision and efficiency of gene integration but also opens new avenues for personalized medicine and sustainable agriculture. As the field continues to evolve, these breakthroughs reaffirm the transformative potential of genome editing in advancing human health and scientific discovery.

Recent milestones in gene and cell therapy, exemplified by the FDA approval of the first gene therapy for sickle cell anemia in 2023, underscore the profound impact of genome editing technologies. These achievements herald a promising future for gene and cell therapies, offering new hope and possibilities for patients and researchers alike.

GenScript Offers One-Stop CRISPR Cas Protein Solution

To support the continued advancement in this field, partnering with experienced providers for critical components such as Cas proteins is essential. In GenScript, we have extensive experience in producing high-quality Cas proteins. GenScript is able to deliver the purified Cas proteins within 2-6 weeks, with stringent quality control standards ensuring >90% purity as verified by SDS-PAGE, endotoxin levels below 10 EU/mg, and no nuclease contamination. Additionally, GenScript can provide in vitro cleavage assays to verify enzyme activity, thereby accelerating early-stage research in gene and cell therapy development. This collaboration can significantly contribute to the successful realization of these groundbreaking therapies.

Reference:

1. Pandey, S., Gao, X.D., Krasnow, N.A. et al. Efficient site-specific integration of large genes in mammalian cells via continuously evolved recombinases and prime editing. Nat. Biomed. Eng (2024). https://doi.org/10.1038/s41551-024-01227-1

2. Alivia Kaylor, CRISPR Genome-Editing Technology: The Future of Gene Editing

3. Patrick D. Hsu, Eric S. Lander, Feng Zhang, Development and Applications of CRISPR-Cas9 for Genome Engineering, Cell, Volume 157, Issue 6, 2014, Pages 1262-1278, https://doi.org/10.1016/j.cell.2014.05.010.

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