Gene Symbol | Syx1A |
Entrez Gene ID | 658750 |
Full Name | syntaxin 1A |
Synonyms | Syn1 |
Gene Type | protein-coding |
Organism | Tribolium castaneum(red flour beetle) |
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ORF » Species Summary » Tribolium castaneum » Syx1A cDNA ORF clone
Gene Symbol | Syx1A |
Entrez Gene ID | 658750 |
Full Name | syntaxin 1A |
Synonyms | Syn1 |
Gene Type | protein-coding |
Organism | Tribolium castaneum(red flour beetle) |
mRNA | Protein | Name |
---|---|---|
XM_008200122.2 | XP_008198344.1 | syntaxin 1A isoform X3 |
XM_008200120.2 | XP_008198342.1 | syntaxin 1A isoform X1 |
NM_001170654.1 | NP_001164125.1 | syntaxin 1A |
XM_015983448.1 | XP_015838934.1 | syntaxin 1A isoform X4 |
XM_008200121.2 | XP_008198343.1 | syntaxin 1A isoform X2 |
Evaluation of quantitative PCR reference genes for gene expression studies in Tribolium castaneum after fungal challenge.
Lord JC, Hartzer K, Toutges M, Oppert B
Journal of microbiological methods80(2)219-21(2010 Feb)
Analysis of transcriptome data in the red flour beetle, Tribolium castaneum.
Park Y, Aikins J, Wang LJ, Beeman RW, Oppert B, Lord JC, Brown SJ, Lorenzen MD, Richards S, Weinstock GM, Gibbs RA
Insect biochemistry and molecular biology38(4)380-6(2008 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Syx1A gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Syx1A cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OTg15858 | |
Clone ID Related Accession (Same CDS sequence) | NM_001170654.1 | |
Accession Version | NM_001170654.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 885bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1535644800000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | syntaxin 1A | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from ES547690.1 and DT779771.1. On Dec 30, 2009 this sequence version replaced XM_965112.2. ##Evidence-Data-START## Transcript exon combination :: ES547690.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1523770, SAMEA1523771 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001164125.1 |
CDS | 96..980 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg13593 | |
Clone ID Related Accession (Same CDS sequence) | XM_008200120.2 | |
Accession Version | XM_008200120.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 942bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | syntaxin 1A isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450195.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008200120.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008198342.1 |
CDS | 266..1207 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg13594 | |
Clone ID Related Accession (Same CDS sequence) | XM_008200121.2 | |
Accession Version | XM_008200121.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | syntaxin 1A isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450195.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008200121.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008198343.1 |
CDS | 266..1156 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg13595 | |
Clone ID Related Accession (Same CDS sequence) | XM_008200122.2 | |
Accession Version | XM_008200122.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 885bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | syntaxin 1A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450195.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 21, 2016 this sequence version replaced XM_008200122.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008198344.1 |
CDS | 266..1150 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTg21589 | |
Clone ID Related Accession (Same CDS sequence) | XM_015983448.1 | |
Accession Version | XM_015983448.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 774bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1458403200000 | |
Organism | Tribolium castaneum(red flour beetle) | |
Product | syntaxin 1A isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015450195.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Tribolium castaneum Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015838934.1 |
CDS | 266..1039 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACTAAAG ACAGATTGGC GGCCCTTGTC GCTGCCCAGA GCGACGATGA CGACGTCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evaluation of quantitative PCR reference genes for gene expression studies in Tribolium castaneum after fungal challenge. |
Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. |