Gene Symbol | HPCAL1 |
Entrez Gene ID | 100190241 |
Full Name | hippocalcin like 1 |
Gene Type | protein-coding |
Organism | Taeniopygia guttata(zebra finch) |
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ORF » Species Summary » Taeniopygia guttata » HPCAL1 cDNA ORF clone
Gene Symbol | HPCAL1 |
Entrez Gene ID | 100190241 |
Full Name | hippocalcin like 1 |
Gene Type | protein-coding |
Organism | Taeniopygia guttata(zebra finch) |
mRNA | Protein | Name |
---|---|---|
XM_030267221.1 | XP_030123081.1 | hippocalcin-like protein 1 isoform X1 |
XM_012572766.1 | XP_012428220.1 | hippocalcin-like protein 1 isoform X1 |
XM_012572769.1 | XP_012428223.1 | hippocalcin-like protein 1 isoform X1 |
XM_030267222.1 | XP_030123082.1 | hippocalcin-like protein 1 isoform X1 |
XM_012572767.1 | XP_012428221.1 | hippocalcin-like protein 1 isoform X1 |
XM_012572768.1 | XP_012428222.1 | hippocalcin-like protein 1 isoform X1 |
NM_001164353.1 | NP_001157825.1 | hippocalcin-like protein 1 |
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, Hirozane-Kishikawa T, Skene P, Hayashizaki Y, Carninci P, Jarvis ED
Proceedings of the National Academy of Sciences of the United States of America103(41)15212-7(2006 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following HPCAL1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HPCAL1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | NM_001164353.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1544284800000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from ABQF01001307.1, ABQF01001308.1 and ABQF01001313.1. On or before Aug 22, 2009 this sequence version replaced XM_002198027.1, XM_002198015.1, XM_002198036.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02689728, SAMN02689729 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157825.1 |
CDS | 244..825 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_030267221.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1565193600000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044214.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030123081.1 |
CDS | 402..983 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_012572766.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1432483200000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002198514.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012428220.1 |
CDS | 227..808 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_012572769.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1432483200000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002198514.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012428223.1 |
CDS | 57..638 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_030267222.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1565193600000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044214.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030123082.1 |
CDS | 275..856 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_012572767.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1432483200000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002198514.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012428221.1 |
CDS | 90..671 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OTd00017 | |
Clone ID Related Accession (Same CDS sequence) | XM_030267221.1 , XM_012572766.1 , XM_012572769.1 , XM_030267222.1 , XM_012572767.1 , XM_012572768.1 , NM_001164353.1 | |
Accession Version | XM_012572768.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1432483200000 | |
Organism | Taeniopygia guttata(zebra finch) | |
Product | hippocalcin-like protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002198514.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012428222.1 |
CDS | 198..779 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGGAAGC AGAACAGCAA GTTGCGCCCC GAGGTGCTCC AGGACCTGCG TGAGAACACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. |