Gene Symbol | irf-3 |
Entrez Gene ID | 100337625 |
Full Name | interferon regulatory factor 3 |
Gene Type | protein-coding |
Organism | Salmo salar(Atlantic salmon) |
ORF » Species Summary » Salmo salar » irf-3 cDNA ORF clone
Gene Symbol | irf-3 |
Entrez Gene ID | 100337625 |
Full Name | interferon regulatory factor 3 |
Gene Type | protein-coding |
Organism | Salmo salar(Atlantic salmon) |
mRNA | Protein | Name |
---|---|---|
NM_001172282.1 | NP_001165753.1 | interferon regulatory factor 3 |
XM_014159240.1 | XP_014014715.1 | interferon regulatory factor 3 isoform X1 |
XM_014159241.1 | XP_014014716.1 | interferon regulatory factor 3 isoform X1 |
XM_014159243.1 | XP_014014718.1 | interferon regulatory factor 3 isoform X3 |
XM_014159242.1 | XP_014014717.1 | interferon regulatory factor 3 isoform X2 |
MyD88 interacts with interferon regulatory factor (IRF) 3 and IRF7 in Atlantic salmon (Salmo salar): transgenic SsMyD88 modulates the IRF-induced type I interferon response and accumulates in aggresomes.
Iliev DB, Sobhkhez M, Fremmerlid K, Jørgensen JB
The Journal of biological chemistry286(49)42715-24(2011 Dec)
Regulation and function of interferon regulatory factors of Atlantic salmon.
Bergan V, Kileng Ø, Sun B, Robertsen B
Molecular immunology47(11-12)2005-14(2010 Jul)
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.
Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS, Koop BF
BMC genomics11279(2010 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following irf-3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the irf-3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OAt01002 | |
Clone ID Related Accession (Same CDS sequence) | NM_001172282.1 , XM_014159240.1 , XM_014159241.1 | |
Accession Version | NM_001172282.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1449bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1461340800000 | |
Organism | Salmo salar(Atlantic salmon) | |
Product | interferon regulatory factor 3 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT059292.1. ##Evidence-Data-START## Transcript exon combination :: BT059292.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02863984, SAMN02864008 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001165753.1 |
CDS | 128..1576 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAt01002 | |
Clone ID Related Accession (Same CDS sequence) | NM_001172282.1 , XM_014159240.1 , XM_014159241.1 | |
Accession Version | XM_014159240.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1449bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1442678400000 | |
Organism | Salmo salar(Atlantic salmon) | |
Product | interferon regulatory factor 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012339963.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Salmo salar Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014014715.1 |
CDS | 245..1693 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAt01002 | |
Clone ID Related Accession (Same CDS sequence) | NM_001172282.1 , XM_014159240.1 , XM_014159241.1 | |
Accession Version | XM_014159241.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1449bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1442678400000 | |
Organism | Salmo salar(Atlantic salmon) | |
Product | interferon regulatory factor 3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012339963.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Salmo salar Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014014716.1 |
CDS | 245..1693 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAt58065 | |
Clone ID Related Accession (Same CDS sequence) | XM_014159242.1 | |
Accession Version | XM_014159242.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1446bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1442678400000 | |
Organism | Salmo salar(Atlantic salmon) | |
Product | interferon regulatory factor 3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012339963.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Salmo salar Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014014717.1 |
CDS | 245..1690 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OAt58066 | |
Clone ID Related Accession (Same CDS sequence) | XM_014159243.1 | |
Accession Version | XM_014159243.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1371bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1442678400000 | |
Organism | Salmo salar(Atlantic salmon) | |
Product | interferon regulatory factor 3 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012339963.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Salmo salar Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_014014718.1 |
CDS | 245..1615 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTCAAT CCAAACCGCT CCTAATCCCT TGGCTGCGCG AACAGATAAA TAGTGGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
MyD88 interacts with interferon regulatory factor (IRF) 3 and IRF7 in Atlantic salmon (Salmo salar): transgenic SsMyD88 modulates the IRF-induced type I interferon response and accumulates in aggresomes. |
Regulation and function of interferon regulatory factors of Atlantic salmon. |
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. |