ORF » Species Summary » Drosophila erecta » LOC6552297 cDNA ORF clone

LOC6552297 cDNA ORF clone, Drosophila erecta

The following LOC6552297 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC6552297 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODi13977 XM_001978858.3
Latest version!		 Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
ODi216827 XM_026979085.1
Latest version!		 Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
View Old Accession Versions >>
ODi13977 XM_001978858.2 Drosophila erecta uncharacterized protein (Dere\GG11155), mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC6552297 ( XM_001978858.3 ) cDNA ORF clone, Drosophila erecta -> XP_001978894.1 Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID ODi13977
    Clone ID Related Accession (Same CDS sequence) XM_001978858.3 , XM_001978858.2
    Accession Version XM_001978858.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1719bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1541347200000
    Organism Drosophila erecta
    Product katanin p60 ATPase-containing subunit A-like 1 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020825194.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 6, 2018 this sequence version replaced XM_001978858.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila erecta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTCCATAA CCTTACTGCG AGGTGGCAAG CAAAAGACAA CCACTTGCGT AGGAATGACC 
    GTAATGGCCA AGACTACGTT CGAAGAAATA TGCGAGAATG CCAAATTAGC ACGGGACATG 
    GCTCTGACGG GCAACTACGA CTCGGCCTGC ATCTACTACG AGGGCCTCCA GGGGCTGCTC 
    GCCCGCCAGC TAAAGGCCAC CGCGGATCCG CTGCGCAAGG GCAAGTGGAG CATGATCAAC 
    CAGCAGATTA GCCAGGAACA CGCCAAAATC AAGGCTATTC AGAGAACCCT ACAAGACATC 
    TCGCTGGACC TGCAGTCAAC CAAATTTGCT CATAAGCTGC GACACCAGCT CAGCGAAGAA 
    AGCACCACCA GTAAAGATCC TTCCGCCTGG TTCAAACCGG ACCCCGACAT TTGGACGCCT 
    CCGCCCAAGG ATCCCGATGT GTGGGGTCCG CCGAAACCAC CACCCACCAC ACAGGCCGTT 
    GGTCGACGAG GCGCACCGAA CAACCGCCGC ACCACTCCGG CAACGCAAAA CAGCCGCCCC 
    AGCAGCACAA TCCCGCAGAG CACTGCCCGG AACGGCCCGT CCTCTACACG AAATTCCCGC 
    AACTCAACGT CCACCACAGC ACCGAACAGC GGAGCACGCA CGACCAATGG AAGGGCTGGC 
    GGTCGCAAGC TGTCCACATC GAACACCAAC GAGGCTAGGG ACGACGACTC CACCGCCGCA 
    GGCATCAATG GTGGAGTGCC CGGCGAGGGA GAAAACGGCG ATCCGCAGGC CGCCCAGGAG 
    GAAGAGCGCA AGTTTCAGCC CAACAACCAC ATCGAAGCCG AGCTAGTCGA CATTCTTGAA 
    CGTGATATTC TTCAAAAGGA CCCCAAAGTG CGCTGGAGCG ACATTGCCGA CCTGCACGAC 
    GCCAAGCGGT TGCTGGAGGA GGCCGTTGTG CTGCCAATGC TCATGCCGGA CTACTTCAAG 
    GGTATCCGGC GACCATGGAA GGGTGTGTTA ATGGTGGGTC CGCCAGGTAC AGGCAAGACA 
    ATGCTCGCCA AGGCGGTGGC AACCGAATGC GGAACTACCT TCTTCAACGT GAGCTCGGCC 
    ACGCTAACAT CCAAGTACCG CGGTGAGTCA GAAAAGATGG TGCGGCTTCT GTTTGAGATG 
    GCCAGGTTCT ACGCGCCCAG CACAATTTTT ATCGACGAGA TCGACTCCCT GTGCTCTCGC 
    AGAGGATCGG AATCGGAGCA CGAGGCCTCG CGACGAGTCA AGTCGGAGCT GCTGGTGCAA 
    ATGGACGGCG TGGGCGGCGG AGAGGAACAG GCCAAGGTGG TGATGGTGCT GGCCGCCACC 
    AACTTTCCCT GGGACATCGA TGAAGCGCTT CGGCGTCGTT TGGAAAAACG CATTTACATC 
    CCACTGCCAT CGGATGAAGG TCGCGAGGCC CTGCTTAAGA TCAATCTCCG CGAGGTCAAG 
    GTGGATGATA GCGTTGATCT TACCTACGTA GCCAATGAGC TGAAGGGCTA TTCCGGCGCC 
    GACATCACAA ACGTGTGCAG GGAGGCCAGC ATGATGTCGA TGCGGAGAAA GATAGCAGGG 
    CTCACCCCAG AGCAGATTCG ACAGTTGGCT ACGGAAGAGG TGGATTTGCC CGTATCAAAC 
    AAGGATTTCA ACGAGGCCAT GAGTCGCTGC AATAAGAGCG TGTCCCGCGC GGACCTGGAC 
    AAGTACGAGA AGTGGATGAA GGAGTTTGGA TCGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_001978894.1
    CDS192..1910
    Translation

    Target ORF information:

    RefSeq Version XM_001978858.3
    Organism Drosophila erecta
    Definition Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_001978858.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTCCATAA CCTTACTGCG AGGTGGCAAG CAAAAGACAA CCACTTGCGT AGGAATGACC 
    GTAATGGCCA AGACTACGTT CGAAGAAATA TGCGAGAATG CCAAATTAGC ACGGGACATG 
    GCTCTGACGG GCAACTACGA CTCGGCCTGC ATCTACTACG AGGGCCTCCA GGGGCTGCTC 
    GCCCGCCAGC TAAAGGCCAC CGCGGATCCG CTGCGCAAGG GCAAGTGGAG CATGATCAAC 
    CAGCAGATTA GCCAGGAACA CGCCAAAATC AAGGCTATTC AGAGAACCCT ACAAGACATC 
    TCGCTGGACC TGCAGTCAAC CAAATTTGCT CATAAGCTGC GACACCAGCT CAGCGAAGAA 
    AGCACCACCA GTAAAGATCC TTCCGCCTGG TTCAAACCGG ACCCCGACAT TTGGACGCCT 
    CCGCCCAAGG ATCCCGATGT GTGGGGTCCG CCGAAACCAC CACCCACCAC ACAGGCCGTT 
    GGTCGACGAG GCGCACCGAA CAACCGCCGC ACCACTCCGG CAACGCAAAA CAGCCGCCCC 
    AGCAGCACAA TCCCGCAGAG CACTGCCCGG AACGGCCCGT CCTCTACACG AAATTCCCGC 
    AACTCAACGT CCACCACAGC ACCGAACAGC GGAGCACGCA CGACCAATGG AAGGGCTGGC 
    GGTCGCAAGC TGTCCACATC GAACACCAAC GAGGCTAGGG ACGACGACTC CACCGCCGCA 
    GGCATCAATG GTGGAGTGCC CGGCGAGGGA GAAAACGGCG ATCCGCAGGC CGCCCAGGAG 
    GAAGAGCGCA AGTTTCAGCC CAACAACCAC ATCGAAGCCG AGCTAGTCGA CATTCTTGAA 
    CGTGATATTC TTCAAAAGGA CCCCAAAGTG CGCTGGAGCG ACATTGCCGA CCTGCACGAC 
    GCCAAGCGGT TGCTGGAGGA GGCCGTTGTG CTGCCAATGC TCATGCCGGA CTACTTCAAG 
    GGTATCCGGC GACCATGGAA GGGTGTGTTA ATGGTGGGTC CGCCAGGTAC AGGCAAGACA 
    ATGCTCGCCA AGGCGGTGGC AACCGAATGC GGAACTACCT TCTTCAACGT GAGCTCGGCC 
    ACGCTAACAT CCAAGTACCG CGGTGAGTCA GAAAAGATGG TGCGGCTTCT GTTTGAGATG 
    GCCAGGTTCT ACGCGCCCAG CACAATTTTT ATCGACGAGA TCGACTCCCT GTGCTCTCGC 
    AGAGGATCGG AATCGGAGCA CGAGGCCTCG CGACGAGTCA AGTCGGAGCT GCTGGTGCAA 
    ATGGACGGCG TGGGCGGCGG AGAGGAACAG GCCAAGGTGG TGATGGTGCT GGCCGCCACC 
    AACTTTCCCT GGGACATCGA TGAAGCGCTT CGGCGTCGTT TGGAAAAACG CATTTACATC 
    CCACTGCCAT CGGATGAAGG TCGCGAGGCC CTGCTTAAGA TCAATCTCCG CGAGGTCAAG 
    GTGGATGATA GCGTTGATCT TACCTACGTA GCCAATGAGC TGAAGGGCTA TTCCGGCGCC 
    GACATCACAA ACGTGTGCAG GGAGGCCAGC ATGATGTCGA TGCGGAGAAA GATAGCAGGG 
    CTCACCCCAG AGCAGATTCG ACAGTTGGCT ACGGAAGAGG TGGATTTGCC CGTATCAAAC 
    AAGGATTTCA ACGAGGCCAT GAGTCGCTGC AATAAGAGCG TGTCCCGCGC GGACCTGGAC 
    AAGTACGAGA AGTGGATGAA GGAGTTTGGA TCGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC6552297 ( XM_001978858.2 ) cDNA ORF clone, Drosophila erecta -> XP_001978894.1 Drosophila erecta uncharacterized protein (Dere\GG11155), mRNA.
    Price & Availability↑
    CloneID ODi13977
    Clone ID Related Accession (Same CDS sequence) XM_001978858.3 , XM_001978858.2
    Accession Version XM_001978858.2 Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1719bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1450540800000
    Organism Drosophila erecta
    Product uncharacterized protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_001956552). On Dec 21, 2015 this sequence version replaced XM_001978858.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 1.04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline URL :: http://flybase.org ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTCCATAA CCTTACTGCG AGGTGGCAAG CAAAAGACAA CCACTTGCGT AGGAATGACC 
    GTAATGGCCA AGACTACGTT CGAAGAAATA TGCGAGAATG CCAAATTAGC ACGGGACATG 
    GCTCTGACGG GCAACTACGA CTCGGCCTGC ATCTACTACG AGGGCCTCCA GGGGCTGCTC 
    GCCCGCCAGC TAAAGGCCAC CGCGGATCCG CTGCGCAAGG GCAAGTGGAG CATGATCAAC 
    CAGCAGATTA GCCAGGAACA CGCCAAAATC AAGGCTATTC AGAGAACCCT ACAAGACATC 
    TCGCTGGACC TGCAGTCAAC CAAATTTGCT CATAAGCTGC GACACCAGCT CAGCGAAGAA 
    AGCACCACCA GTAAAGATCC TTCCGCCTGG TTCAAACCGG ACCCCGACAT TTGGACGCCT 
    CCGCCCAAGG ATCCCGATGT GTGGGGTCCG CCGAAACCAC CACCCACCAC ACAGGCCGTT 
    GGTCGACGAG GCGCACCGAA CAACCGCCGC ACCACTCCGG CAACGCAAAA CAGCCGCCCC 
    AGCAGCACAA TCCCGCAGAG CACTGCCCGG AACGGCCCGT CCTCTACACG AAATTCCCGC 
    AACTCAACGT CCACCACAGC ACCGAACAGC GGAGCACGCA CGACCAATGG AAGGGCTGGC 
    GGTCGCAAGC TGTCCACATC GAACACCAAC GAGGCTAGGG ACGACGACTC CACCGCCGCA 
    GGCATCAATG GTGGAGTGCC CGGCGAGGGA GAAAACGGCG ATCCGCAGGC CGCCCAGGAG 
    GAAGAGCGCA AGTTTCAGCC CAACAACCAC ATCGAAGCCG AGCTAGTCGA CATTCTTGAA 
    CGTGATATTC TTCAAAAGGA CCCCAAAGTG CGCTGGAGCG ACATTGCCGA CCTGCACGAC 
    GCCAAGCGGT TGCTGGAGGA GGCCGTTGTG CTGCCAATGC TCATGCCGGA CTACTTCAAG 
    GGTATCCGGC GACCATGGAA GGGTGTGTTA ATGGTGGGTC CGCCAGGTAC AGGCAAGACA 
    ATGCTCGCCA AGGCGGTGGC AACCGAATGC GGAACTACCT TCTTCAACGT GAGCTCGGCC 
    ACGCTAACAT CCAAGTACCG CGGTGAGTCA GAAAAGATGG TGCGGCTTCT GTTTGAGATG 
    GCCAGGTTCT ACGCGCCCAG CACAATTTTT ATCGACGAGA TCGACTCCCT GTGCTCTCGC 
    AGAGGATCGG AATCGGAGCA CGAGGCCTCG CGACGAGTCA AGTCGGAGCT GCTGGTGCAA 
    ATGGACGGCG TGGGCGGCGG AGAGGAACAG GCCAAGGTGG TGATGGTGCT GGCCGCCACC 
    AACTTTCCCT GGGACATCGA TGAAGCGCTT CGGCGTCGTT TGGAAAAACG CATTTACATC 
    CCACTGCCAT CGGATGAAGG TCGCGAGGCC CTGCTTAAGA TCAATCTCCG CGAGGTCAAG 
    GTGGATGATA GCGTTGATCT TACCTACGTA GCCAATGAGC TGAAGGGCTA TTCCGGCGCC 
    GACATCACAA ACGTGTGCAG GGAGGCCAGC ATGATGTCGA TGCGGAGAAA GATAGCAGGG 
    CTCACCCCAG AGCAGATTCG ACAGTTGGCT ACGGAAGAGG TGGATTTGCC CGTATCAAAC 
    AAGGATTTCA ACGAGGCCAT GAGTCGCTGC AATAAGAGCG TGTCCCGCGC GGACCTGGAC 
    AAGTACGAGA AGTGGATGAA GGAGTTTGGA TCGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_001978894.1
    CDS138..1856
    Translation

    Target ORF information:

    RefSeq Version XM_001978858.2
    Organism Drosophila erecta
    Definition Drosophila erecta uncharacterized protein (Dere\GG11155), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_001978858.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGTCCATAA CCTTACTGCG AGGTGGCAAG CAAAAGACAA CCACTTGCGT AGGAATGACC 
    GTAATGGCCA AGACTACGTT CGAAGAAATA TGCGAGAATG CCAAATTAGC ACGGGACATG 
    GCTCTGACGG GCAACTACGA CTCGGCCTGC ATCTACTACG AGGGCCTCCA GGGGCTGCTC 
    GCCCGCCAGC TAAAGGCCAC CGCGGATCCG CTGCGCAAGG GCAAGTGGAG CATGATCAAC 
    CAGCAGATTA GCCAGGAACA CGCCAAAATC AAGGCTATTC AGAGAACCCT ACAAGACATC 
    TCGCTGGACC TGCAGTCAAC CAAATTTGCT CATAAGCTGC GACACCAGCT CAGCGAAGAA 
    AGCACCACCA GTAAAGATCC TTCCGCCTGG TTCAAACCGG ACCCCGACAT TTGGACGCCT 
    CCGCCCAAGG ATCCCGATGT GTGGGGTCCG CCGAAACCAC CACCCACCAC ACAGGCCGTT 
    GGTCGACGAG GCGCACCGAA CAACCGCCGC ACCACTCCGG CAACGCAAAA CAGCCGCCCC 
    AGCAGCACAA TCCCGCAGAG CACTGCCCGG AACGGCCCGT CCTCTACACG AAATTCCCGC 
    AACTCAACGT CCACCACAGC ACCGAACAGC GGAGCACGCA CGACCAATGG AAGGGCTGGC 
    GGTCGCAAGC TGTCCACATC GAACACCAAC GAGGCTAGGG ACGACGACTC CACCGCCGCA 
    GGCATCAATG GTGGAGTGCC CGGCGAGGGA GAAAACGGCG ATCCGCAGGC CGCCCAGGAG 
    GAAGAGCGCA AGTTTCAGCC CAACAACCAC ATCGAAGCCG AGCTAGTCGA CATTCTTGAA 
    CGTGATATTC TTCAAAAGGA CCCCAAAGTG CGCTGGAGCG ACATTGCCGA CCTGCACGAC 
    GCCAAGCGGT TGCTGGAGGA GGCCGTTGTG CTGCCAATGC TCATGCCGGA CTACTTCAAG 
    GGTATCCGGC GACCATGGAA GGGTGTGTTA ATGGTGGGTC CGCCAGGTAC AGGCAAGACA 
    ATGCTCGCCA AGGCGGTGGC AACCGAATGC GGAACTACCT TCTTCAACGT GAGCTCGGCC 
    ACGCTAACAT CCAAGTACCG CGGTGAGTCA GAAAAGATGG TGCGGCTTCT GTTTGAGATG 
    GCCAGGTTCT ACGCGCCCAG CACAATTTTT ATCGACGAGA TCGACTCCCT GTGCTCTCGC 
    AGAGGATCGG AATCGGAGCA CGAGGCCTCG CGACGAGTCA AGTCGGAGCT GCTGGTGCAA 
    ATGGACGGCG TGGGCGGCGG AGAGGAACAG GCCAAGGTGG TGATGGTGCT GGCCGCCACC 
    AACTTTCCCT GGGACATCGA TGAAGCGCTT CGGCGTCGTT TGGAAAAACG CATTTACATC 
    CCACTGCCAT CGGATGAAGG TCGCGAGGCC CTGCTTAAGA TCAATCTCCG CGAGGTCAAG 
    GTGGATGATA GCGTTGATCT TACCTACGTA GCCAATGAGC TGAAGGGCTA TTCCGGCGCC 
    GACATCACAA ACGTGTGCAG GGAGGCCAGC ATGATGTCGA TGCGGAGAAA GATAGCAGGG 
    CTCACCCCAG AGCAGATTCG ACAGTTGGCT ACGGAAGAGG TGGATTTGCC CGTATCAAAC 
    AAGGATTTCA ACGAGGCCAT GAGTCGCTGC AATAAGAGCG TGTCCCGCGC GGACCTGGAC 
    AAGTACGAGA AGTGGATGAA GGAGTTTGGA TCGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC6552297 ( XM_026979085.1 ) cDNA ORF clone, Drosophila erecta -> XP_026834886.1 Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID ODi216827
    Clone ID Related Accession (Same CDS sequence) XM_026979085.1
    Accession Version XM_026979085.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1818bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1541347200000
    Organism Drosophila erecta
    Product katanin p60 ATPase-containing subunit A-like 1 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020825194.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila erecta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGTCCATAA CCAAACACTT GGAGAAACTC ACGCACTCGA ACGCTTTAAT TGGAACTAAT 
    CTCTGTCTCT CGTTTTTGGC CACAATGACG ACAACCTGTT CCGATCGCCA GTTACTGCGA 
    GGTGGCAAGC AAAAGACAAC CACTTGCGTA GGAATGACCG TAATGGCCAA GACTACGTTC 
    GAAGAAATAT GCGAGAATGC CAAATTAGCA CGGGACATGG CTCTGACGGG CAACTACGAC 
    TCGGCCTGCA TCTACTACGA GGGCCTCCAG GGGCTGCTCG CCCGCCAGCT AAAGGCCACC 
    GCGGATCCGC TGCGCAAGGG CAAGTGGAGC ATGATCAACC AGCAGATTAG CCAGGAACAC 
    GCCAAAATCA AGGCTATTCA GAGAACCCTA CAAGACATCT CGCTGGACCT GCAGTCAACC 
    AAATTTGCTC ATAAGCTGCG ACACCAGCTC AGCGAAGAAA GCACCACCAG TAAAGATCCT 
    TCCGCCTGGT TCAAACCGGA CCCCGACATT TGGACGCCTC CGCCCAAGGA TCCCGATGTG 
    TGGGGTCCGC CGAAACCACC ACCCACCACA CAGGCCGTTG GTCGACGAGG CGCACCGAAC 
    AACCGCCGCA CCACTCCGGC AACGCAAAAC AGCCGCCCCA GCAGCACAAT CCCGCAGAGC 
    ACTGCCCGGA ACGGCCCGTC CTCTACACGA AATTCCCGCA ACTCAACGTC CACCACAGCA 
    CCGAACAGCG GAGCACGCAC GACCAATGGA AGGGCTGGCG GTCGCAAGCT GTCCACATCG 
    AACACCAACG AGGCTAGGGA CGACGACTCC ACCGCCGCAG GCATCAATGG TGGAGTGCCC 
    GGCGAGGGAG AAAACGGCGA TCCGCAGGCC GCCCAGGAGG AAGAGCGCAA GTTTCAGCCC 
    AACAACCACA TCGAAGCCGA GCTAGTCGAC ATTCTTGAAC GTGATATTCT TCAAAAGGAC 
    CCCAAAGTGC GCTGGAGCGA CATTGCCGAC CTGCACGACG CCAAGCGGTT GCTGGAGGAG 
    GCCGTTGTGC TGCCAATGCT CATGCCGGAC TACTTCAAGG GTATCCGGCG ACCATGGAAG 
    GGTGTGTTAA TGGTGGGTCC GCCAGGTACA GGCAAGACAA TGCTCGCCAA GGCGGTGGCA 
    ACCGAATGCG GAACTACCTT CTTCAACGTG AGCTCGGCCA CGCTAACATC CAAGTACCGC 
    GGTGAGTCAG AAAAGATGGT GCGGCTTCTG TTTGAGATGG CCAGGTTCTA CGCGCCCAGC 
    ACAATTTTTA TCGACGAGAT CGACTCCCTG TGCTCTCGCA GAGGATCGGA ATCGGAGCAC 
    GAGGCCTCGC GACGAGTCAA GTCGGAGCTG CTGGTGCAAA TGGACGGCGT GGGCGGCGGA 
    GAGGAACAGG CCAAGGTGGT GATGGTGCTG GCCGCCACCA ACTTTCCCTG GGACATCGAT 
    GAAGCGCTTC GGCGTCGTTT GGAAAAACGC ATTTACATCC CACTGCCATC GGATGAAGGT 
    CGCGAGGCCC TGCTTAAGAT CAATCTCCGC GAGGTCAAGG TGGATGATAG CGTTGATCTT 
    ACCTACGTAG CCAATGAGCT GAAGGGCTAT TCCGGCGCCG ACATCACAAA CGTGTGCAGG 
    GAGGCCAGCA TGATGTCGAT GCGGAGAAAG ATAGCAGGGC TCACCCCAGA GCAGATTCGA 
    CAGTTGGCTA CGGAAGAGGT GGATTTGCCC GTATCAAACA AGGATTTCAA CGAGGCCATG 
    AGTCGCTGCA ATAAGAGCGT GTCCCGCGCG GACCTGGACA AGTACGAGAA GTGGATGAAG 
    GAGTTTGGAT CGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_026834886.1
    CDS192..2009
    Translation

    Target ORF information:

    RefSeq Version XM_026979085.1
    Organism Drosophila erecta
    Definition Drosophila erecta katanin p60 ATPase-containing subunit A-like 1 (LOC6552297), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_026979085.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGTCCATAA CCAAACACTT GGAGAAACTC ACGCACTCGA ACGCTTTAAT TGGAACTAAT 
    CTCTGTCTCT CGTTTTTGGC CACAATGACG ACAACCTGTT CCGATCGCCA GTTACTGCGA 
    GGTGGCAAGC AAAAGACAAC CACTTGCGTA GGAATGACCG TAATGGCCAA GACTACGTTC 
    GAAGAAATAT GCGAGAATGC CAAATTAGCA CGGGACATGG CTCTGACGGG CAACTACGAC 
    TCGGCCTGCA TCTACTACGA GGGCCTCCAG GGGCTGCTCG CCCGCCAGCT AAAGGCCACC 
    GCGGATCCGC TGCGCAAGGG CAAGTGGAGC ATGATCAACC AGCAGATTAG CCAGGAACAC 
    GCCAAAATCA AGGCTATTCA GAGAACCCTA CAAGACATCT CGCTGGACCT GCAGTCAACC 
    AAATTTGCTC ATAAGCTGCG ACACCAGCTC AGCGAAGAAA GCACCACCAG TAAAGATCCT 
    TCCGCCTGGT TCAAACCGGA CCCCGACATT TGGACGCCTC CGCCCAAGGA TCCCGATGTG 
    TGGGGTCCGC CGAAACCACC ACCCACCACA CAGGCCGTTG GTCGACGAGG CGCACCGAAC 
    AACCGCCGCA CCACTCCGGC AACGCAAAAC AGCCGCCCCA GCAGCACAAT CCCGCAGAGC 
    ACTGCCCGGA ACGGCCCGTC CTCTACACGA AATTCCCGCA ACTCAACGTC CACCACAGCA 
    CCGAACAGCG GAGCACGCAC GACCAATGGA AGGGCTGGCG GTCGCAAGCT GTCCACATCG 
    AACACCAACG AGGCTAGGGA CGACGACTCC ACCGCCGCAG GCATCAATGG TGGAGTGCCC 
    GGCGAGGGAG AAAACGGCGA TCCGCAGGCC GCCCAGGAGG AAGAGCGCAA GTTTCAGCCC 
    AACAACCACA TCGAAGCCGA GCTAGTCGAC ATTCTTGAAC GTGATATTCT TCAAAAGGAC 
    CCCAAAGTGC GCTGGAGCGA CATTGCCGAC CTGCACGACG CCAAGCGGTT GCTGGAGGAG 
    GCCGTTGTGC TGCCAATGCT CATGCCGGAC TACTTCAAGG GTATCCGGCG ACCATGGAAG 
    GGTGTGTTAA TGGTGGGTCC GCCAGGTACA GGCAAGACAA TGCTCGCCAA GGCGGTGGCA 
    ACCGAATGCG GAACTACCTT CTTCAACGTG AGCTCGGCCA CGCTAACATC CAAGTACCGC 
    GGTGAGTCAG AAAAGATGGT GCGGCTTCTG TTTGAGATGG CCAGGTTCTA CGCGCCCAGC 
    ACAATTTTTA TCGACGAGAT CGACTCCCTG TGCTCTCGCA GAGGATCGGA ATCGGAGCAC 
    GAGGCCTCGC GACGAGTCAA GTCGGAGCTG CTGGTGCAAA TGGACGGCGT GGGCGGCGGA 
    GAGGAACAGG CCAAGGTGGT GATGGTGCTG GCCGCCACCA ACTTTCCCTG GGACATCGAT 
    GAAGCGCTTC GGCGTCGTTT GGAAAAACGC ATTTACATCC CACTGCCATC GGATGAAGGT 
    CGCGAGGCCC TGCTTAAGAT CAATCTCCGC GAGGTCAAGG TGGATGATAG CGTTGATCTT 
    ACCTACGTAG CCAATGAGCT GAAGGGCTAT TCCGGCGCCG ACATCACAAA CGTGTGCAGG 
    GAGGCCAGCA TGATGTCGAT GCGGAGAAAG ATAGCAGGGC TCACCCCAGA GCAGATTCGA 
    CAGTTGGCTA CGGAAGAGGT GGATTTGCCC GTATCAAACA AGGATTTCAA CGAGGCCATG 
    AGTCGCTGCA ATAAGAGCGT GTCCCGCGCG GACCTGGACA AGTACGAGAA GTGGATGAAG 
    GAGTTTGGAT CGTCATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    Assembly reconciliation.
    Bioinformatics (Oxford, England)24(1)42-5(2008 Jan)
    Zimin AV,Smith DR,Sutton G,Yorke JA


    Evolution of genes and genomes on the Drosophila phylogeny.
    Nature450(7167)203-18(2007 Nov)
    ,Clark AG,Eisen MB,Smith DR,Bergman CM,Oliver B,Markow TA,Kaufman TC,Kellis M,Gelbart W,Iyer VN,Pollard DA,Sackton TB,Larracuente AM,Singh ND,Abad JP,Abt DN,Adryan B,Aguade M,Akashi H,Anderson WW,Aquadro CF,Ardell DH,Arguello R,Artieri CG,Barbash DA,Barker D,Barsanti P,Batterham P,Batzoglou S,Begun D,Bhutkar A,Blanco E,Bosak SA,Bradley RK,Brand AD,Brent MR,Brooks AN,Brown RH,Butlin RK,Caggese C,Calvi BR,Bernardo de Carvalho A,Caspi A,Castrezana S,Celniker SE,Chang JL,Chapple C,Chatterji S,Chinwalla A,Civetta A,Clifton SW,Comeron JM,Costello JC,Coyne JA,Daub J,David RG,Delcher AL,Delehaunty K,Do CB,Ebling H,Edwards K,Eickbush T,Evans JD,Filipski A,Findeiss S,Freyhult E,Fulton L,Fulton R,Garcia AC,Gardiner A,Garfield DA,Garvin BE,Gibson G,Gilbert D,Gnerre S,Godfrey J,Good R,Gotea V,Gravely B,Greenberg AJ,Griffiths-Jones S,Gross S,Guigo R,Gustafson EA,Haerty W,Hahn MW,Halligan DL,Halpern AL,Halter GM,Han MV,Heger A,Hillier L,Hinrichs AS,Holmes I,Hoskins RA,Hubisz MJ,Hultmark D,Huntley MA,Jaffe DB,Jagadeeshan S,Jeck WR,Johnson J,Jones CD,Jordan WC,Karpen GH,Kataoka E,Keightley PD,Kheradpour P,Kirkness EF,Koerich LB,Kristiansen K,Kudrna D,Kulathinal RJ,Kumar S,Kwok R,Lander E,Langley CH,Lapoint R,Lazzaro BP,Lee SJ,Levesque L,Li R,Lin CF,Lin MF,Lindblad-Toh K,Llopart A,Long M,Low L,Lozovsky E,Lu J,Luo M,Machado CA,Makalowski W,Marzo M,Matsuda M,Matzkin L,McAllister B,McBride CS,McKernan B,McKernan K,Mendez-Lago M,Minx P,Mollenhauer MU,Montooth K,Mount SM,Mu X,Myers E,Negre B,Newfeld S,Nielsen R,Noor MA,O'Grady P,Pachter L,Papaceit M,Parisi MJ,Parisi M,Parts L,Pedersen JS,Pesole G,Phillippy AM,Ponting CP,Pop M,Porcelli D,Powell JR,Prohaska S,Pruitt K,Puig M,Quesneville H,Ram KR,Rand D,Rasmussen MD,Reed LK,Reenan R,Reily A,Remington KA,Rieger TT,Ritchie MG,Robin C,Rogers YH,Rohde C,Rozas J,Rubenfield MJ,Ruiz A,Russo S,Salzberg SL,Sanchez-Gracia A,Saranga DJ,Sato H,Schaeffer SW,Schatz MC,Schlenke T,Schwartz R,Segarra C,Singh RS,Sirot L,Sirota M,Sisneros NB,Smith CD,Smith TF,Spieth J,Stage DE,Stark A,Stephan W,Strausberg RL,Strempel S,Sturgill D,Sutton G,Sutton GG,Tao W,Teichmann S,Tobari YN,Tomimura Y,Tsolas JM,Valente VL,Venter E,Venter JC,Vicario S,Vieira FG,Vilella AJ,Villasante A,Walenz B,Wang J,Wasserman M,Watts T,Wilson D,Wilson RK,Wing RA,Wolfner MF,Wong A,Wong GK,Wu CI,Wu G,Yamamoto D,Yang HP,Yang SP,Yorke JA,Yoshida K,Zdobnov E,Zhang P,Zhang Y,Zimin AV,Baldwin J,Abdouelleil A,Abdulkadir J,Abebe A,Abera B,Abreu J,Acer SC,Aftuck L,Alexander A,An P,Anderson E,Anderson S,Arachi H,Azer M,Bachantsang P,Barry A,Bayul T,Berlin A,Bessette D,Bloom T,Blye J,Boguslavskiy L,Bonnet C,Boukhgalter B,Bourzgui I,Brown A,Cahill P,Channer S,Cheshatsang Y,Chuda L,Citroen M,Collymore A,Cooke P,Costello M,D'Aco K,Daza R,De Haan G,DeGray S,DeMaso C,Dhargay N,Dooley K,Dooley E,Doricent M,Dorje P,Dorjee K,Dupes A,Elong R,Falk J,Farina A,Faro S,Ferguson D,Fisher S,Foley CD,Franke A,Friedrich D,Gadbois L,Gearin G,Gearin CR,Giannoukos G,Goode T,Graham J,Grandbois E,Grewal S,Gyaltsen K,Hafez N,Hagos B,Hall J,Henson C,Hollinger A,Honan T,Huard MD,Hughes L,Hurhula B,Husby ME,Kamat A,Kanga B,Kashin S,Khazanovich D,Kisner P,Lance K,Lara M,Lee W,Lennon N,Letendre F,LeVine R,Lipovsky A,Liu X,Liu J,Liu S,Lokyitsang T,Lokyitsang Y,Lubonja R,Lui A,MacDonald P,Magnisalis V,Maru K,Matthews C,McCusker W,McDonough S,Mehta T,Meldrim J,Meneus L,Mihai O,Mihalev A,Mihova T,Mittelman R,Mlenga V,Montmayeur A,Mulrain L,Navidi A,Naylor J,Negash T,Nguyen T,Nguyen N,Nicol R,Norbu C,Norbu N,Novod N,O'Neill B,Osman S,Markiewicz E,Oyono OL,Patti C,Phunkhang P,Pierre F,Priest M,Raghuraman S,Rege F,Reyes R,Rise C,Rogov P,Ross K,Ryan E,Settipalli S,Shea T,Sherpa N,Shi L,Shih D,Sparrow T,Spaulding J,Stalker J,Stange-Thomann N,Stavropoulos S,Stone C,Strader C,Tesfaye S,Thomson T,Thoulutsang Y,Thoulutsang D,Topham K,Topping I,Tsamla T,Vassiliev H,Vo A,Wangchuk T,Wangdi T,Weiand M,Wilkinson J,Wilson A,Yadav S,Young G,Yu Q,Zembek L,Zhong D,Zimmer A,Zwirko Z,Jaffe DB,Alvarez P,Brockman W,Butler J,Chin C,Gnerre S,Grabherr M,Kleber M,Mauceli E,MacCallum I


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