Lop1 cDNA ORF clone, Apis mellifera(honey bee)

Gene
Clones
gRNAs

Summary

Gene Symbol	Lop1
Entrez Gene ID	413961
Full Name	long wavelength sensitive opsin 1
Synonyms	GB19657
Gene Type	protein-coding
Organism	Apis mellifera(honey bee)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001011639.2	NP_001011639.2	rhodopsin, long-wavelength

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Finding the missing honey bee genes: lessons learned from a genome upgrade.
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, , Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA,
BMC genomics1586(2014 Jan)

Characterisation of the RNA interference response against the long-wavelength receptor of the honeybee.
Leboulle G, Niggebrügge C, Roessler R, Briscoe AD, Menzel R, Hempel de Ibarra N
Insect biochemistry and molecular biology43(10)959-69(2013 Oct)

Insights into social insects from the genome of the honeybee Apis mellifera.

Nature443(7114)931-49(2006 Oct)

The history of early bee diversification based on five genes plus morphology.
Danforth BN, Sipes S, Fang J, Brady SG
Proceedings of the National Academy of Sciences of the United States of America103(41)15118-23(2006 Oct)

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Velarde RA, Sauer CD, Walden KK, Fahrbach SE, Robertson HM
Insect biochemistry and molecular biology35(12)1367-77(2005 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Lop1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Lop1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OHd00445	NM_001011639.2 Latest version!	Apis mellifera long wavelength sensitive opsin 1 (Lop1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Lop1 ( NM_001011639.2 ) cDNA ORF clone, Apis mellifera(honey bee) -> NP_001011639.2 Apis mellifera long wavelength sensitive opsin 1 (Lop1), mRNA.

Price & Availability↑

CloneID	OHd00445
Clone ID Related Accession (Same CDS sequence)	NM_001011639.2
Accession Version	NM_001011639.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1134bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1577116800000
Organism	Apis mellifera(honey bee)
Product	rhodopsin, long-wavelength
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DB745242.1, BP539800.1, U26026.1, BP540067.1 and BP539889.1. On Jan 6, 2010 this sequence version replaced NM_001011639.1. ##Evidence-Data-START## Transcript exon combination :: HP504715.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00113341, SAMN00120364 [ECO:0000348] ##Evidence-Data-END##

ATGATTGCTG TTTCGGGACC AAGTTATGAA GCTTTCTCTT ACGGTGGCCA AGCCAGATTC 
AATAATCAAA CAGTGGTTGA CAAAGTTCCA CCTGATATGC TTCATCTGAT TGACGCTAAT 
TGGTATCAAT ACCCACCATT AAATCCTATG TGGCATGGAA TCCTTGGATT CGTAATAGGC 
ATGCTTGGCT TTGTCTCGGT TATGGGAAAT GGAATGGTCG TATATATATT TCTTTCAACA 
AAAAGTCTTC GCACGCCAAG CAATTTGTTC GTAATCAACC TTGCCATCAG TGATTTCCTC 
ATGATGTTTT GCATGTCTCC ACCTATGGTA ATCAATTGTT ATTACGAGAC ATGGGTACTA 
GGACCTCTTT TCTGTCAAAT CTACGCGATG TTGGGCTCCT TGTTCGGATG TGGCTCCATT 
TGGACAATGA CGATGATCGC ATTCGACAGA TACAACGTAA TCGTGAAAGG TTTATCCGGT 
AAACCGCTGT CCATTAATGG GGCTCTCATT CGTATAATAG CTATATGGTT GTTCTCTCTC 
GGATGGACTA TTGCACCTAT GTTTGGCTGG AATCGATATG TACCTGAAGG TAATATGACC 
GCTTGCGGCA CCGATTACTT CAACAGAGGA TTATTATCTG CTTCTTACCT TGTCTGCTAC 
GGCATTTGGG TTTACTTCGT CCCTCTGTTC CTCATCATTT ATAGCTATTG GTTTATCATT 
CAAGCGGTAG CTGCCCATGA GAAGAATATG CGCGAGCAAG CAAAAAAGAT GAATGTTGCT 
TCTCTCCGAT CGTCTGAGAA TCAAAACACT AGTGCCGAAT GTAAATTGGC CAAAGTTGCT 
CTTATGACAA TCTCTTTATG GTTTATGGCT TGGACTCCGT ATCTCGTCAT TAATTTCTCG 
GGTATATTCA ATCTCGTTAA AATCAGCCCA CTTTTTACCA TCTGGGGTTC TCTCTTTGCC 
AAAGCCAACG CAGTTTACAA TCCGATCGTT TATGGAATTA GTCATCCGAA ATATCGAGCT 
GCGCTGTTTG CGAAATTCCC ATCATTGGCG TGCGCTGCTG AACCATCCTC AGACGCTGTA 
TCCACAACCT CCGGTACAAC TACTGTTACG GATAACGAAA AATCTAATGC GTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001011639.2
CDS	215..1348
Translation	MIAVSGPSYEAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSSDAVSTTSGTTTVTDNEKSNA

Target ORF information:

RefSeq Version	NM_001011639.2
Organism	Apis mellifera(honey bee)
Definition	Apis mellifera long wavelength sensitive opsin 1 (Lop1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001011639.2

ORF Insert Sequence:

ATGATTGCTG TTTCGGGACC AAGTTATGAA GCTTTCTCTT ACGGTGGCCA AGCCAGATTC 
AATAATCAAA CAGTGGTTGA CAAAGTTCCA CCTGATATGC TTCATCTGAT TGACGCTAAT 
TGGTATCAAT ACCCACCATT AAATCCTATG TGGCATGGAA TCCTTGGATT CGTAATAGGC 
ATGCTTGGCT TTGTCTCGGT TATGGGAAAT GGAATGGTCG TATATATATT TCTTTCAACA 
AAAAGTCTTC GCACGCCAAG CAATTTGTTC GTAATCAACC TTGCCATCAG TGATTTCCTC 
ATGATGTTTT GCATGTCTCC ACCTATGGTA ATCAATTGTT ATTACGAGAC ATGGGTACTA 
GGACCTCTTT TCTGTCAAAT CTACGCGATG TTGGGCTCCT TGTTCGGATG TGGCTCCATT 
TGGACAATGA CGATGATCGC ATTCGACAGA TACAACGTAA TCGTGAAAGG TTTATCCGGT 
AAACCGCTGT CCATTAATGG GGCTCTCATT CGTATAATAG CTATATGGTT GTTCTCTCTC 
GGATGGACTA TTGCACCTAT GTTTGGCTGG AATCGATATG TACCTGAAGG TAATATGACC 
GCTTGCGGCA CCGATTACTT CAACAGAGGA TTATTATCTG CTTCTTACCT TGTCTGCTAC 
GGCATTTGGG TTTACTTCGT CCCTCTGTTC CTCATCATTT ATAGCTATTG GTTTATCATT 
CAAGCGGTAG CTGCCCATGA GAAGAATATG CGCGAGCAAG CAAAAAAGAT GAATGTTGCT 
TCTCTCCGAT CGTCTGAGAA TCAAAACACT AGTGCCGAAT GTAAATTGGC CAAAGTTGCT 
CTTATGACAA TCTCTTTATG GTTTATGGCT TGGACTCCGT ATCTCGTCAT TAATTTCTCG 
GGTATATTCA ATCTCGTTAA AATCAGCCCA CTTTTTACCA TCTGGGGTTC TCTCTTTGCC 
AAAGCCAACG CAGTTTACAA TCCGATCGTT TATGGAATTA GTCATCCGAA ATATCGAGCT 
GCGCTGTTTG CGAAATTCCC ATCATTGGCG TGCGCTGCTG AACCATCCTC AGACGCTGTA 
TCCACAACCT CCGGTACAAC TACTGTTACG GATAACGAAA AATCTAATGC GTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Finding the missing honey bee genes: lessons learned from a genome upgrade.
BMC genomics1586(2014 Jan)
Elsik CG,Worley KC,Bennett AK,Beye M,Camara F,Childers CP,de Graaf DC,Debyser G,Deng J,Devreese B,Elhaik E,Evans JD,Foster LJ,Graur D,Guigo R,,Hoff KJ,Holder ME,Hudson ME,Hunt GJ,Jiang H,Joshi V,Khetani RS,Kosarev P,Kovar CL,Ma J,Maleszka R,Moritz RF,Munoz-Torres MC,Murphy TD,Muzny DM,Newsham IF,Reese JT,Robertson HM,Robinson GE,Rueppell O,Solovyev V,Stanke M,Stolle E,Tsuruda JM,Vaerenbergh MV,Waterhouse RM,Weaver DB,Whitfield CW,Wu Y,Zdobnov EM,Zhang L,Zhu D,Gibbs RA,

Characterisation of the RNA interference response against the long-wavelength receptor of the honeybee.
Insect biochemistry and molecular biology43(10)959-69(2013 Oct)
Leboulle G,Niggebrügge C,Roessler R,Briscoe AD,Menzel R,Hempel de Ibarra N

Insights into social insects from the genome of the honeybee Apis mellifera.
Nature443(7114)931-49(2006 Oct)

The history of early bee diversification based on five genes plus morphology.
Proceedings of the National Academy of Sciences of the United States of America103(41)15118-23(2006 Oct)
Danforth BN,Sipes S,Fang J,Brady SG

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain.
Insect biochemistry and molecular biology35(12)1367-77(2005 Dec)
Velarde RA,Sauer CD,Walden KK,Fahrbach SE,Robertson HM

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Lop1 cDNA ORF clone, Apis mellifera(honey bee)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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